[ ソース: shasta ]
パッケージ: shasta (0.12.0-1 など)
nanopore whole genome assembly (binaries and scripts)
De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.
Computational methods used by the Shasta assembler include:
* Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads.
* Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.
This package contains the executable binaries (tools) and accommodating scripts.
その他の shasta 関連パッケージ
|
|
|
|
-
- dep: libboost-chrono1.83.0t64 (>= 1.83.0)
- 時間、時刻、クロックの C++ 表現
-
- dep: libboost-program-options1.83.0 (>= 1.83.0)
- C++ 用プログラムオプションライブラリ
-
- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 共有ライブラリ
-
- dep: libstdc++6 (>= 13.1) [amd64]
- GNU 標準 C++ ライブラリ v3
- dep: libstdc++6 (>= 14) [arm64]
-
- dep: python3-shasta (= 0.12.0-1+b1) [amd64]
- nanopore whole genome assembly (dynamic library)
- dep: python3-shasta (= 0.12.0-1+b2) [arm64]