パッケージ: cat-bat (5.3-2) [debports]
taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.
その他の cat-bat 関連パッケージ
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- dep: diamond-aligner
- accelerated BLAST compatible local sequence aligner
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- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program
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- dep: python3
- interactive high-level object-oriented language (default python3 version)