パッケージ: pscan-tfbs (1.2.2-4 など)
pscan-tfbs に関するリンク
Debian の資源:
pscan-tfbs ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [www.beaconlab.it]
類似のパッケージ:
search for transcription factor binding sites
Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.
Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.
その他の pscan-tfbs 関連パッケージ
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- dep: libc6 (>= 2.38)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC 共有ライブラリ
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- dep: libgsl28 (>= 2.8+dfsg)
- GNU Scientific Library (GSL) -- library package
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3