[ ソース: hinge ]
パッケージ: hinge (0.5.0-7 など)
long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.
その他の hinge 関連パッケージ
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- dep: daligner
- ロングリードヌクレオチド配列間のローカルアラインメント発見
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- dep: dascrubber
- alignment-based scrubbing pipeline for DNA sequencing reads
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- dep: dazzdb
- manage nucleotide sequencing read data
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- dep: libc6 (>= 2.38)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libfmt10 (>= 10.1.1+ds1)
- fast type-safe C++ formatting library -- library
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- dep: libgcc-s1 (>= 3.0)
- GCC 共有ライブラリ
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- dep: libgomp1 (>= 4.2.1)
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-colormap
- ease manipulation of matplotlib colormaps and color codecs (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pbcore
- Python 3 library for processing PacBio data files
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- dep: python3-ujson
- ultra fast JSON encoder and decoder for Python 3
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム