パッケージ: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1)

[ ソース: t-coffee  ]

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

タグ: 分野: 生物学, バイオインフォマティクス, 実装言語: implemented-in::c, interface::commandline, 役割: プログラム, 対象範囲: ユーティリティ, 目的: use::analysing, use::comparing, サポート形式: 追加のタグが必要, works-with-format::plaintext, works-with::TODO

その他の t-coffee 関連パッケージ

• dep: libc6 (>= 2.34)

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 共有ライブラリ

• dep: libstdc++6 (>= 4.1.1)

  GNU 標準 C++ ライブラリ v3

• rec: amap-align

  Protein multiple alignment by sequence annealing

• rec: clustalo

  General-purpose multiple sequence alignment program for proteins

• rec: clustalw

  global multiple nucleotide or peptide sequence alignment

• rec: dialign-tx

  セグメントベースの多重配列アライメント

• rec: fsa

  Fast Statistical Alignment of protein, RNA or DNA sequences

• rec: kalign

  グローバルおよびプログレッシブ多重配列アライメント

• rec: libsoap-lite-perl

  Perl implementation of a SOAP client and server

• rec: libxml-simple-perl

  Perl module for reading and writing XML

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: muscle

  Multiple alignment program of protein sequences

• rec: mustang

  multiple structural alignment of proteins

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

• rec: poa

  Partial Order Alignment for multiple sequence alignment

• rec: prank

  Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

• rec: probcons

  確率的で整合性に基づく多重配列アライメント

• rec: proda

  タンパク質配列のマルチプルアライメント

• rec: tm-align

  structural alignment of proteins

• sug: boxshade

  多重配列アライメントのプリティプリンティング

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: t-coffee-examples

  annotated examples for the use of T-Coffee

t-coffee のダウンロード

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アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
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