パッケージ: progressivemauve (1.2.0+4713+dfsg-5 など) [debports]
progressivemauve に関するリンク
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外部の資源:
- ホームページ [darlinglab.org]
類似のパッケージ:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
その他の progressivemauve 関連パッケージ
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- C++ でのファイルシステム操作 (ポータブルなパス、ディレクトリの列挙など)
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams ライブラリ
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
- C++ 用プログラムオプションライブラリ
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- dep: libc6.1 (>= 2.37)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6.1-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 共有ライブラリ
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- dep: libgenome0 (>= 1.3.11+svn20110227.4616)
- toolkit for developing bioinformatic related software
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- dep: libmems1 (>= 1.6.0+4725)
- library to support DNA string matching and comparative genomics
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3
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- dep: libunwind8
- プログラムのコールチェーン測定ライブラリ - ランタイム版
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- enh: mauve-aligner
- multiple genome alignment