[ bullseye ]
[ sid ]
[ ソース: sepp ]
パッケージ: sepp (4.5.5+dfsg-1)
phylogeny with ensembles of Hidden Markov Models
The tool SEPP implementing these methods uses ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.
SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
その他の sepp 関連パッケージ
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- dep: default-jre
- Standard Java or Java compatible Runtime
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- dep: hmmer
- タンパク質配列解析用のプロファイル隠れマルコフモデル
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- dep: libgoogle-gson-java
- Converts Java objects into their JSON representation
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- dep: libjenkins-json-java
- Library for transforming Java objects between XML and JSON
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- dep: libjson-java
- library for transforming Java objects and XML to JSON and back again
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: pplacer
- phylogenetic placement and downstream analysis
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)