パッケージ: r-bioc-monocle (2.32.0-1)

[ ソース: r-bioc-monocle  ]

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

その他の r-bioc-monocle 関連パッケージ

• dep: libc6 (>= 2.14)

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 共有ライブラリ

• dep: libstdc++6 (>= 14)

  GNU 標準 C++ ライブラリ v3

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-api-bioc-3.19

  以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics

• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

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• dep: r-bioc-biocviews

  Categorized views of R package repositories

• dep: r-bioc-hsmmsinglecell (>= 0.101.5)

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• dep: r-bioc-limma

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• dep: r-cran-cluster

  Rousseeuw et al によるクラスタ分析用 GNU R パッケージ

• dep: r-cran-combinat

  GNU R package with utilities for combinatorics

• dep: r-cran-ddrtree (>= 0.1.4)

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• dep: r-cran-dplyr

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• dep: r-cran-fastica

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• dep: r-cran-ggplot2 (>= 1.0.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.0.1)

  GNU R network analysis and visualization

• dep: r-cran-irlba (>= 2.0.0)

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-leidenbase (>= 0.1.9)

  GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.2-6)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

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• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-proxy

  GNU R distance and similarity measures

• dep: r-cran-rann (>= 2.5)

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-reshape2

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• dep: r-cran-rtsne

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• dep: r-cran-slam

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• dep: r-cran-stringr

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• dep: r-cran-tibble

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• dep: r-cran-vgam (>= 1.0-6)

  GNU R package for estimating vector generalized additive models

• dep: r-cran-viridis

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• sug: r-bioc-scater

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• sug: r-cran-hmisc

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• sug: r-cran-knitr

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• sug: r-cran-seurat

  Tools for Single Cell Genomics

• sug: r-cran-testthat

  GNU R testsuite

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アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
amd64	1,410.1 kB	1,679.0 kB	[ファイル一覧]