パッケージ: bio-rainbow (2.0.4+dfsg-1)
bio-rainbow に関するリンク
Debian の資源:
bio-rainbow ソースパッケージをダウンロード:
- [bio-rainbow_2.0.4+dfsg-1.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [sourceforge.net]
類似のパッケージ:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
その他の bio-rainbow 関連パッケージ
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- dep: libc6 (>= 2.14) [amd64]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
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- dep: perl
- Larry Wall 作の実用的な抽出とレポート用の言語