パッケージ: pyvcf (0.6.8+git20170215.476169c-1)

[ ソース: python-pyvcf  ]

helper scripts for Variant Call Format (VCF) parser

The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project.

The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.

This package provides helper scripts using python3-pyvcf.

その他の pyvcf 関連パッケージ

• dep: python3

  対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)

• dep: python3-pyvcf

  Variant Call Format (VCF) parser for Python 3

pyvcf のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
all	10.4 kB	29.0 kB	[ファイル一覧]