パッケージ: hhsuite (3.0~beta3+dfsg-3)

[ ソース: hhsuite  ]

sensitive protein sequence searching based on HMM-HMM alignment

HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

This package contains HHsearch and HHblits among other programs and utilities.

HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.

HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.

その他の hhsuite 関連パッケージ

• dep: ffindex (>= 0.9.9.8)

  simple index/database for huge amounts of small files

• dep: hhsuite-data (= 3.0~beta3+dfsg-3)

  sensitive protein sequence searching based on HMM-HMM alignment (data)

• dep: libc6 (>= 2.27)

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

• dep: libffindex0 (>= 0.9.9.9)

  library for simple index/database for huge amounts of small files

• dep: libgcc1 (>= 1:3.0)

  GCC 共有ライブラリ

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) サポートライブラリ

• dep: libstdc++6 (>= 5.2)

  GNU 標準 C++ ライブラリ v3

• dep: python

  対話式の高レベルオブジェクト指向言語 (Python2 バージョン)

hhsuite のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
amd64	1,007.9 kB	7,803.0 kB	[ファイル一覧]