パッケージ: cct (1:1.0.0-1)
cct に関するリンク
Debian の資源:
cct ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [stothard.afns.ualberta.ca]
類似のパッケージ:
visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences of interest to existing genomes or sequence collections. The comparisons are conducted using BLAST, and the BLAST results are presented in the form of graphical maps that can also show sequence features, gene and protein names, COG category assignments, and sequence composition characteristics. CCT can generate maps in a variety of sizes, including 400 Megapixel maps suitable for posters. Comparisons can be conducted within a particular species or genus, or all available genomes can be used. The entire map creation process, from downloading sequences to redrawing zoomed maps, can be completed easily using scripts included with the CCT. User-defined features or analysis results can be included on maps, and maps can be extensively customized. To simplify program setup, a CCT virtual machine that includes all dependencies preinstalled is available. Detailed tutorials illustrating the use of CCT are included with the CCT documentation.
その他の cct 関連パッケージ
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- dep: bioperl
- Perl tools for computational molecular biology
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- dep: cgview
- Circular Genome Viewer
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- dep: imagemagick
- 画像編集プログラム -- バイナリ
以下のパッケージによって提供される仮想パッケージでもあります: graphicsmagick-imagemagick-compat, imagemagick-6.q16 - または graphicsmagick
- 画像処理ツール集
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- dep: liberror-perl
- オブジェクト指向的方法でエラー・例外処理を行うための Perl モジュール
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- dep: libtie-ixhash-perl
- 連想配列の順序づけ用 Perl モジュール
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- dep: libwww-perl
- world-wide web へのシンプルで一貫性のあるインターフェース
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- dep: perl
- Larry Wall 作の実用的な抽出とレポート用の言語