パッケージ: libbio-db-gff-perl (1.7.4-1)

[ ソース: libbio-db-gff-perl  ]

Storage and retrieval of sequence annotation data

Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.

The following operations are supported by this module:

 - retrieving a segment of sequence based on the ID of a landmark

 - retrieving the DNA from that segment

 - finding all annotations that overlap with the segment

 - finding all annotations that are completely contained within the

segment

 - retrieving all annotations of a particular type, either within a

segment, or globally

 - conversion from absolute to relative coordinates and back again,

using any arbitrary landmark for the relative coordinates

 - using a sequence segment to create new segments based on relative

offsets

その他の libbio-db-gff-perl 関連パッケージ

• dep: libapache-dbi-perl

  interface connecting Apache server to database via perl's DBI

• dep: libbio-db-biofetch-perl

  Database object interface to BioFetch retrieval

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libcgi-pm-perl

  module for Common Gateway Interface applications

• dep: perl

  Larry Wall 作の実用的な抽出とレポート用の言語

libbio-db-gff-perl のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
all	266.7 kB	855.0 kB	[ファイル一覧]