[ ソース: seqtools ]
パッケージ: belvu (4.44.1+dfsg-6 など)
belvu に関するリンク
Debian の資源:
seqtools ソースパッケージをダウンロード:
- [seqtools_4.44.1+dfsg-6.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-6.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [www.sanger.ac.uk]
類似のパッケージ:
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments.
* Residues can be coloured by conservation, with user-configurable
cutoffs and colours.
* Residues can be coloured by residue type (user-configurable).
* Colour schemes can be imported or exported.
* Swissprot (or PIR) entries can be fetched by double clicking.
* The position in the alignment can be easily tracked.
* Manual deletion of rows and columns.
* Automatic editing of rows and columns based on customisable criteria:
- removal of all-gap columns;
- removal of all gaps;
- removal of redundant sequences;
- removal of a column by a user-specified percentage of gaps;
- filtering of sequences by percent identity;
- removal of sequences by a user-specified percentage of gaps;
- removal of partial sequences (those starting or ending with
gaps); and
- removal of columns by conservation (with user-specified
upper/lower cutoffs).
* The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
* Distance matrices between sequences can be generated using a variety
of distance metrics.
* Distance matrices can be imported or exported.
* Phylogenetic trees can be constructed based on various distance-based
tree reconstruction algorithms.
* Trees can be saved in New Hampshire format.
* Belvu can perform bootstrap phylogenetic reconstruction.
その他の belvu 関連パッケージ
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- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 二次元ベクトルグラフィックライブラリ
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- dep: libcurl4 (>= 7.16.2)
- 使いやすいクライアントサイドの URL 転送ライブラリ (OpenSSL フレーバ)
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- dep: libgbtools0 (>= 4.44.1+dfsg)
- library for visualising sequence alignments
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- dep: libglib2.0-0 (>= 2.22.0)
- C ルーチンの GLib ライブラリ
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- dep: libgtk2.0-0 (>= 2.12.0)
- GTK graphical user interface library - old version
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- dep: libpango-1.0-0 (>= 1.14.0)
- 国際化されたテキストのレイアウトと描画
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- dep: libstdc++6 (>= 4.1.1)
- GNU 標準 C++ ライブラリ v3