パッケージ: r-bioc-gviz (1.42.1+dfsg-1)

[ ソース: r-bioc-gviz  ]

Plotting data and annotation information along genomic coordinates

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

その他の r-bioc-gviz 関連パッケージ

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-api-bioc-3.16

  以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.27.5)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase (>= 2.15.3)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.11.3)

  generic functions for Bioconductor

• dep: r-bioc-biomart (>= 2.11.0)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-biostrings (>= 2.33.11)

  GNU R string objects representing biological sequences

• dep: r-bioc-biovizbase (>= 1.13.8)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome (>= 1.33.1)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-ensembldb (>= 2.11.3)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.1.16)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures (>= 1.17.22)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.17.20)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 1.99.18)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.13)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.5.7)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-digest (>= 0.6.8)

  GNU R package for 'hash digest' of R data structures

• dep: r-cran-lattice

  'Trellis' グラフィック用 GNU R パッケージ

• dep: r-cran-latticeextra (>= 0.6-26)

  GNU R package of additional graphical displays based on lattice

• dep: r-cran-matrixstats (>= 0.8.14)

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

• sug: r-cran-xml2

  GNU R XML parser

r-bioc-gviz のダウンロード

すべての利用可能アーキテクチャ向けのダウンロード

アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
all	5,024.5 kB	6,970.0 kB	[ファイル一覧]