パッケージ: r-cran-seurat (4.3.0-1)

[ ソース: r-cran-seurat  ]

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

その他の r-cran-seurat 関連パッケージ

• dep: libc6 (>= 2.32)

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC 共有ライブラリ

• dep: libstdc++6 (>= 11)

  GNU 標準 C++ ライブラリ v3

• dep: r-api-4.0

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-cran-cluster

  Rousseeuw et al によるクラスタ分析用 GNU R パッケージ

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-fitdistrplus

  support fit of parametric distribution

• dep: r-cran-future

  R package: A Future API for R

• dep: r-cran-future.apply

  apply function to elements in parallel using futures

• dep: r-cran-ggplot2 (>= 3.3.0)

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-ggridges

  Ridgeline Plots in 'ggplot2'

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-ica

  Independent Component Analysis

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-irlba

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-kernsmooth

  カーネル型平滑化および密度関数推定のための GNU R パッケージ

• dep: r-cran-leiden (>= 0.3.1)

  GNU R implementation of Leiden clustering algorithm

• dep: r-cran-lmtest

  GNU R package for diagnostic checking in linear models

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.5-0)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-miniui

  Shiny UI Widgets for Small Screens

• dep: r-cran-patchwork

  GNU R the composer of plots

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• dep: r-cran-plotly (>= 4.9.0)

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-png

  GNU R package to read and write PNG images

• dep: r-cran-progressr

  GNU R inclusive, unifying API for progress updates

• dep: r-cran-rann

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcpp (>= 1.0.7)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppannoy (>= 0.0.18)

  Rcpp bindings for Annoy (approximate nearest neighbors)

• dep: r-cran-rcppeigen

  GNU R package for Eigen templated linear algebra

• dep: r-cran-rcppprogress

  interruptible progress bar for C++ in GNU R packages

• dep: r-cran-reticulate

  R interface to Python modules, classes, and functions

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rocr

  ROC 曲線の準備と表示をする GNU Rパッケージ

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-scattermore (>= 0.7)

  GNU R scatterplots with more points

• dep: r-cran-sctransform (>= 0.3.5)

  Variance Stabilizing Transformations for Single Cell UMI Data

• dep: r-cran-seuratobject (>= 4.1.3)

  GNU R data structures for single cell data

• dep: r-cran-shiny

  GNU R ウェブアプリケーションフレームワーク

• dep: r-cran-spatstat.explore

  GNU R exploratory data analysis for the 'spatstat' family

• dep: r-cran-spatstat.geom

  GNU R geometrical functionality of the 'spatstat' package

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-uwot (>= 0.1.14)

  GNU R uniform manifold approximation and projection (UMAP)

• rec: r-cran-hdf5r

  GNU R interface to the 'HDF5' binary data format

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocgenerics

  generic functions for Bioconductor

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• sug: r-cran-metap

  Meta-Analysis of Significance Values

• sug: r-cran-mixtools

  GNU R tools for analyzing finite mixture models

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-rsvd

  Randomized Singular Value Decomposition

• sug: r-cran-vgam

  GNU R package for estimating vector generalized additive models

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