[ ソース: xpore ]
パッケージ: xpore (2.1-1)
Nanopore analysis of differential RNA modifications
RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives.
The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype.
その他の xpore 関連パッケージ
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- dep: pyensembl
- installs data from the Ensembl genome database
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-h5py-serial
- general-purpose Python interface to hdf5 (Python 3 serial)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-ujson
- ultra fast JSON encoder and decoder for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- sug: xpore-doc
- documentation for the xpore Python package