[ ソース: parsnp ]
パッケージ: parsnp (1.7.4+dfsg-2)
parsnp に関するリンク
Debian の資源:
parsnp ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [harvest.readthedocs.org]
類似のパッケージ:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
その他の parsnp 関連パッケージ
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 共有ライブラリ
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 11)
- GNU 標準 C++ ライブラリ v3
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- dep: mummer
- 遺伝子全体の効率的な配列アライメント
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)