[ ソース: discosnp ]
パッケージ: discosnp (1:2.6.2-2)
discosnp に関するリンク
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discosnp ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [colibread.inria.fr]
類似のパッケージ:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
その他の discosnp 関連パッケージ
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [amd64 以外]
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- dep: libgcc-s1 (>= 3.0)
- GCC 共有ライブラリ
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 11)
- GNU 標準 C++ ライブラリ v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- 圧縮ライブラリ - ランタイム