[ ソース: seqtools ]
パッケージ: dotter (4.44.1+dfsg-7 など)
dotter に関するリンク
Debian の資源:
seqtools ソースパッケージをダウンロード:
- [seqtools_4.44.1+dfsg-7.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-7.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [www.sanger.ac.uk]
類似のパッケージ:
detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two sequences.
* Every residue in one sequence is compared to every residue in the other, and a matrix of scores is calculated. * One sequence is plotted on the x-axis and the other on the y-axis. * Noise is filtered out so that alignments appear as diagonal lines. * Pairwise scores are averaged over a sliding window to make the score matrix more intelligible. * The averaged score matrix forms a three-dimensional landscape, with the two sequences in two dimensions and the height of the peaks in the third. This landscape is projected onto two dimensions using a grey-scale image - the darker grey of a peak, the higher the score is. * The contrast and threshold of the grey-scale image can be adjusted interactively, without having to recalculate the score matrix. * An Alignment Tool is provided to examine the sequence alignment that the grey-scale image represents. * Known high-scoring pairs can be loaded from a GFF file and overlaid onto the plot. * Gene models can be loaded from GFF and displayed alongside the relevant axis. * Compare a sequence against itself to find internal repeats. * Find overlaps between multiple sequences by making a dot-plot of all sequences versus themselves. * Run Dotter in batch mode to create large, time-consuming dot-plots as a background process.
その他の dotter 関連パッケージ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 二次元ベクトルグラフィックライブラリ
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- dep: libcurl4 (>= 7.16.2)
- 使いやすいクライアントサイドの URL 転送ライブラリ (OpenSSL フレーバ)
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- dep: libgbtools0 (>= 4.44.1+dfsg)
- library for visualising sequence alignments
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- dep: libgcc-s1 (>= 3.5)
- GCC 共有ライブラリ
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- dep: libglib2.0-0 (>= 2.22.0)
- C ルーチンの GLib ライブラリ
-
- dep: libgtk2.0-0 (>= 2.12.0)
- GTK graphical user interface library - old version
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- dep: libpango-1.0-0 (>= 1.14.0)
- 国際化されたテキストのレイアウトと描画
-
- dep: libpangocairo-1.0-0 (>= 1.14.0)
- 国際化されたテキストのレイアウトと描画
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- dep: libstdc++6 (>= 5.2)
- GNU 標準 C++ ライブラリ v3