パッケージ: r-cran-ape (5.7-1)
r-cran-ape に関するリンク
Debian の資源:
r-cran-ape ソースパッケージをダウンロード:
メンテナ:
外部の資源:
- ホームページ [cran.r-project.org]
類似のパッケージ:
GNU R package for Analyses of Phylogenetics and Evolution
This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
その他の r-cran-ape 関連パッケージ
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC 共有ライブラリ
-
- dep: liblapack3
- 線形代数ルーチンライブラリ 3 - 共有ライブラリ版
- または liblapack.so.3
- 以下のパッケージによって提供される仮想パッケージです: libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libstdc++6 (>= 11)
- GNU 標準 C++ ライブラリ v3
-
- dep: r-api-4.0
- 以下のパッケージによって提供される仮想パッケージです: r-base-core
-
- dep: r-base-core (>= 4.2.2.20221110-2)
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-digest
- GNU R package for 'hash digest' of R data structures
-
- dep: r-cran-lattice
- 'Trellis' グラフィック用 GNU R パッケージ
-
- dep: r-cran-nlme
- （非）線形混合効果モデル用 GNU R パッケージ
-
- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
-
- rec: r-cran-phangorn
- GNU R package for phylogenetic analysis
-
- sug: clustalw
- global multiple nucleotide or peptide sequence alignment
-
- sug: muscle
- Multiple alignment program of protein sequences
-
- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- sug: r-cran-expm
- GNU R Computation of the matrix exponential and related quantities
-
- sug: r-cran-gee
- Generalized Estimation Equation Solver
-
- sug: r-cran-igraph
- GNU R network analysis and visualization
-
- sug: t-coffee
- Multiple Sequence Alignment