[ ソース: mhap ]
パッケージ: mhap (2.1.3+dfsg-3)
locality-sensitive hashing to detect long-read overlaps
The MinHash Alignment Process (MHAP--pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
その他の mhap 関連パッケージ
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- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- dep: jaligner
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- dep: jarwrapper
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- dep: libfastutil-java
- Java API providing type-specific maps, sets, lists and queues
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- dep: libguava-java (>= 19)
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- dep: libssw-java
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