Package: vcfanno (0.3.2+ds-2 and others)
Links for vcfanno
Debian Resources:
Download Source Package vcfanno:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special cases of ID and FILTER to pull from those VCF columns. * For BED, values are pulled from (1-based) column number. * For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
Other Packages Related to vcfanno
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- dep: libc6 (>= 2.4)
- Libreria C GNU: librerie condivise
also a virtual package provided by libc6-udeb
Download vcfanno
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
mips64el | 0.3.2+ds-2+b6 | 1,671.5 kB | 6,915.0 kB | [list of files] |