Package: libtfbs-perl (0.7.1-3 and others)
Links for libtfbs-perl
Debian Resources:
Download Source Package libtfbs-perl:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Charles Plessy (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [tfbs.genereg.net]
Similar packages:
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
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Download libtfbs-perl
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
amd64 | 0.7.1-3+b2 | 228.4 kB | 989.0 kB | [list of files] |
arm64 | 0.7.1-3+b2 | 228.4 kB | 989.0 kB | [list of files] |
armel | 0.7.1-3+b2 | 229.5 kB | 989.0 kB | [list of files] |
armhf | 0.7.1-3+b2 | 227.8 kB | 985.0 kB | [list of files] |
i386 | 0.7.1-3+b2 | 229.1 kB | 993.0 kB | [list of files] |
mips64el | 0.7.1-3+b2 | 228.4 kB | 990.0 kB | [list of files] |
mipsel | 0.7.1-3+b2 | 228.1 kB | 986.0 kB | [list of files] |
ppc64el | 0.7.1-3+b2 | 229.3 kB | 1,037.0 kB | [list of files] |
s390x | 0.7.1-3+b2 | 228.3 kB | 989.0 kB | [list of files] |