Package: stringtie (2.2.1+ds-2)

[ Source: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Other Packages Related to stringtie

• dep: libc6 (>= 2.33)

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

• dep: libhts3 (>= 1.13)

  libreria C per formati di dati di sequenziamento ad alte prestazioni

• dep: libstdc++6 (>= 4.1.1)

  libreria GNU Standard C++, versione 3

• rec: stringtie-examples

  Package not available

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

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