Package: libseqlib-dev (1.2.0+dfsg-11 and others) [debports]

[ Source:  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Other Packages Related to libseqlib-dev

• dep: libbwa-dev

  Burrows-Wheeler Aligner source files

• dep: libfml-dev

  development headers for libfml

• dep: libhts-dev

  development files for the HTSlib

• dep: libjsoncpp-dev

  library for reading and writing JSON for C++ (devel files)

• dep: libseqlib2 (= 1.2.0+dfsg-11+b2)

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

• dep: libssw-dev

  Development headers and static libraries for libssw
  also a virtual package provided by libssw-dev

• dep: zlib1g-dev

  compression library - development

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Architecture	Version	Package Size	Installed Size	Files
x32 (unofficial port)	1.2.0+dfsg-11+b2	215.7 kB	995.0 kB	[list of files]