Package: sepp (4.5.5+dfsg-1)

[ Source: sepp  ]

phylogeny with ensembles of Hidden Markov Models

The tool SEPP implementing these methods uses ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

Other Packages Related to sepp

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: libgoogle-gson-java

  Converts Java objects into their JSON representation

• dep: libjenkins-json-java

  Library for transforming Java objects between XML and JSON

• dep: libjson-java

  library for transforming Java objects and XML to JSON and back again

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: pplacer

  phylogenetic placement and downstream analysis

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

Download sepp

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	162.1 kB	396.0 kB	[list of files]
arm64	162.1 kB	396.0 kB	[list of files]
ppc64 (unofficial port)	162.1 kB	396.0 kB	[list of files]