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[ Source: ntcard  ]

Package: ntcard (1.2.2+dfsg-9)

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Streaming algorithm to estimate cardinality in genomics datasets

As input it takes file(s) in fasta, fastq, sam, or bam formats and computes the total number of distinct k-mers, F0, and also the k-mer coverage frequency histogram, fi, i>=1.

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Architecture Package Size Installed Size Files
ppc64el 42.8 kB218.0 kB [list of files]