Package: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2) [debports]
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- Homepage [github.com]
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CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Other Packages Related to ngmlr
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- dep: libc6 (>= 2.29)
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC támogató programkönyvtár
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- tömörítő könyvtár - futásidejű
Download ngmlr
Architecture | Package Size | Installed Size | Files |
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ppc64 (unofficial port) | 673.7 kB | 1,300.0 kB | [list of files] |