Package: jellyfish (2.3.0-12) [debports]

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count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Other Packages Related to jellyfish

• dep: libc6.1 (>= 2.31)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC támogató programkönyvtár

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.0-12)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

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Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	847.7 kB	5,022.0 kB	[list of files]