Package: progressivemauve (1.2.0+4713+dfsg-5 and others)

[ Source: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Other Packages Related to progressivemauve

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• dep: libboost-iostreams1.83.0 (>= 1.83.0)

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• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.5)

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• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

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• dep: libmems1t64 (>= 1.6.0+4725)

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• dep: libstdc++6 (>= 13.1)

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• enh: mauve-aligner

  multiple genome alignment

Download progressivemauve

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Architecture	Version	Package Size	Installed Size	Files
armhf	1.2.0+4713+dfsg-5+b3	668.8 kB	3,070.0 kB	[list of files]