Package: med-imaging (3.8.1)

[ Source: debian-med  ]

Debian Med image processing and visualization packages

This metapackage will install Debian packages which might be useful in medical image processing and visualization.

On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows.

Tags: Field: Biology, Medical Imaging, Role: role::metapackage, suite::debian

Other Packages Related to med-imaging

• dep: med-config (= 3.8.1)

  Debian Med general config package

• dep: med-tasks (= 3.8.1)

  Debian Med tasks for tasksel

• rec: aeskulap

  Package not available

• rec: amide

  software for Medical Imaging

• rec: bart

  tools for computational magnetic resonance imaging
  also a virtual package provided by bart-cuda

• rec: bart-view

  viewer for multi-dimensional complex-valued data

• rec: biosig-tools

  format conversion tools for biomedical data formats

• rec: ctn

  Central Test Node, a DICOM implementation for medical imaging

• rec: ctsim

  Computed tomography simulator

• rec: dcm2niix

  next generation DICOM to NIfTI converter

• rec: dcmtk

  OFFIS DICOM toolkit command line utilities

• rec: dicom3tools

  DICOM medical image files manipulation and conversion tools

• rec: dicomnifti

  converts DICOM files into the NIfTI format

• rec: dicomscope

  OFFIS DICOM Viewer

• rec: gdf-tools

  IO library for the GDF -- helper tools

• rec: gwyddion

  Scanning Probe Microscopy visualization and analysis tool

• rec: heudiconv

  DICOM converter with support for structure heuristics

• rec: imagej

  Image processing program with a focus on microscopy images

• rec: invesalius

  3D medical imaging reconstruction software

• rec: ismrmrd-tools

  command-line tools for ISMRMRD

• rec: king

  interactive system for three-dimensional vector graphics

• rec: libgdcm-tools

  Grassroots DICOM tools and utilities

• rec: medcon

  Medical Image (DICOM, ECAT, ...) conversion tool

• rec: mia-tools

  Command line tools for gray scale image processing

• rec: mia-viewit

  Package not available

• rec: mialmpick

  Tools for landmark picking in 3D volume data sets

• rec: minc-tools

  MNI medical image format tools

• rec: mriconvert

  Package not available

• rec: mricron

  magnetic resonance image conversion, viewing and analysis

• rec: mrtrix3

  diffusion-weighted MRI white matter tractography

• rec: nifti-bin

  tools shipped with the NIfTI library

• rec: odil

  C++11 library for the DICOM standard (application)

• rec: odin

  develop, simulate and run magnetic resonance sequences

• rec: openslide-tools

  Manipulation and conversion tools for OpenSlide

• rec: orthanc

  Lightweight, RESTful DICOM server for medical imaging

• rec: orthanc-wsi

  Whole-slide imaging support for Orthanc (digital pathology)

• rec: pixelmed-apps

  DICOM implementation containing Image Viewer and a ECG Viewer - cli

• rec: plastimatch

  medical image reconstruction and registration

• rec: python3-dipy

  Python library for the analysis of diffusion MRI datasets

• rec: python3-nibabel

  Python3 bindings to various neuroimaging data formats

• rec: python3-nipy

  Analysis of structural and functional neuroimaging data

• rec: python3-nipype

  Neuroimaging data analysis pipelines in Python3

• rec: python3-nitime

  timeseries analysis for neuroscience data (nitime)

• rec: python3-pydicom

  DICOM medical file reading and writing (Python 3)

• rec: python3-pyxid

  interface for Cedrus XID and StimTracker devices

• rec: python3-surfer

  visualize Freesurfer's data in Python3

• rec: sigviewer

  GUI viewer for biosignals such as EEG, EMG, and ECG

• rec: teem-apps

  Tools to process and visualize scientific data and images - command line tools

• rec: tifffile

  virtual package provided by python3-tifffile

• rec: vrrender

  virtual package provided by sightviewer

• rec: vtk-dicom-tools

  DICOM for VTK - tools

• rec: xmedcon

  Medical Image (DICOM, ECAT, ...) conversion tool (GUI)

• sug: afni

  Package not available

• sug: ants

  advanced normalization tools for brain and image analysis

• sug: bart-cuda

  tools for computational magnetic resonance imaging

• sug: bioimagesuite

  Package not available

• sug: bioimagexd

  Package not available

• sug: blox

  Package not available

• sug: brainvisa

  Package not available

• sug: camitk-imp

  workbench application for the CamiTK library

• sug: caret

  Package not available

• sug: cdmedicpacs

  Package not available

• sug: cellprofiler

  Package not available

• sug: cmtk

  Computational Morphometry Toolkit

• sug: connectomeviewer

  Package not available

• sug: conquest-common

  Package not available

• sug: conquest-dbase

  Package not available

• sug: conquest-mysql

  Package not available

• sug: conquest-postgres

  Package not available

• sug: conquest-sqlite

  Package not available

• sug: crea

  Package not available

• sug: dcm4chee

  Package not available

• sug: devide

  Package not available

• sug: dicom4j

  Package not available

• sug: dicoogle

  Package not available

• sug: drjekyll

  Package not available

• sug: dti-query

  Package not available

• sug: dtitk

  Package not available

• sug: ecg2png

  Package not available

• sug: eeglab

  Package not available

• sug: elastix

  toolbox for rigid and nonrigid registration of images

• sug: fiji

  Package not available

• sug: freesurfer

  Package not available

• sug: fsl

  Package not available

• sug: fslview

  Package not available

• sug: gimias

  Package not available

• sug: ginkgocadx

  Package not available

• sug: hid

  Package not available

• sug: illustrate

  cartoonish representations of large biological molecules

• sug: imagemagick

  image manipulation programs -- binaries
  also a virtual package provided by graphicsmagick-imagemagick-compat, imagemagick-6.q16, imagemagick-7.q16

• sug: imagevis3d

  Package not available

• sug: imview

  Image viewing and analysis application

• sug: incf-nidash-oneclick-clients

  Package not available

• sug: insightapplications

  Package not available

• sug: isis

  Package not available

• sug: itksnap

  Package not available

• sug: jemris

  Package not available

• sug: jist

  Package not available

• sug: kradview

  Package not available

• sug: libdcm4che-java

  Package not available

• sug: lipsia

  Package not available

• sug: maris

  Package not available

• sug: mayam

  Package not available

• sug: medisnap

  Package not available

• sug: mesa-test-tools

  Package not available

• sug: micromanager

  Package not available

• sug: mipav

  Package not available

• sug: miview

  Package not available

• sug: mni-autoreg

  Package not available

• sug: mni-colin27-nifti

  Package not available

• sug: mni-icbm152-nlin-2009

  Package not available

• sug: mni-n3

  Package not available

• sug: mrisim

  Package not available

• sug: omero

  Package not available

• sug: opendicom.net

  Package not available

• sug: openelectrophy

  Package not available

• sug: openmeeg-tools

  Package not available

• sug: opensourcepacs

  Package not available

• sug: openwalnut-qt4

  Package not available

• sug: orthanc-dicomweb

  Plugin to extend Orthanc with support of WADO and DICOMweb

• sug: orthanc-gdcm

  DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)

• sug: orthanc-imagej

  ImageJ plugin to import images from Orthanc

• sug: orthanc-mysql

  Plugins to use MySQL or MariaDB as a database back-end to Orthanc

• sug: orthanc-neuro

  Neuroimaging plugin for Orthanc

• sug: orthanc-postgresql

  Plugins to use PostgreSQL as a database back-end to Orthanc

• sug: orthanc-webviewer

  Web viewer of medical images for Orthanc

• sug: paraview

  Parallel Visualization Application

• sug: piano

  Package not available

• sug: pngquant

  PNG (Portable Network Graphics) image optimising utility

• sug: pymeg

  Package not available

• sug: science-workflow

  workflow management systems useful for scientific research

• sug: slicer

  Package not available

• sug: sofa-apps

  Package not available

• sug: stabilitycalc

  Package not available

• sug: stir

  Package not available

• sug: tempo

  Package not available

• sug: trimage

  GUI and command-line interface to optimize image files

• sug: via-bin

  Package not available

• sug: visit

  Package not available

• sug: vmtk

  Package not available

• sug: voxbo

  Package not available

• sug: xnat

  Package not available

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Architecture	Package Size	Installed Size	Files
all	9.7 kB	30.0 kB	[list of files]