Package: pycoqc (2.5.2+dfsg-1)

[ Source: pycoqc  ]

computes metrics and generates Interactive QC plots

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+

Other Packages Related to pycoqc

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-h5py-serial

  general-purpose Python interface to hdf5 (Python 3 serial)

• dep: python3-jinja2

  small but fast and easy to use stand-alone template engine

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-plotly (>= 4.1.0)

  Python 3 plotting library for publication-quality graphs

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-tqdm

  fast, extensible progress bar for Python 3 and CLI tool

Download pycoqc

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	35.4 kB	195.0 kB	[list of files]