Package: python3-pyfaidx (0.5.9.2-1)

[ Source: python-pyfaidx  ]

efficient random access to fasta subsequences for Python 3

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 3 modules to access fasta files.

Other Packages Related to python3-pyfaidx

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-six

  Python 2 and 3 compatibility library (Python 3 interface)

Download python3-pyfaidx

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	25.8 kB	119.0 kB	[list of files]