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[ Source: cassiopee  ]

Package: cassiopee (1.0.9-3 and others)

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index and search tool in genomic sequences

Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This package contains the cassiopee and cassiopeeknife tools.

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Download cassiopee

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 1.0.9-3+b1 17.6 kB72.0 kB [list of files]
arm64 1.0.9-3+b1 16.9 kB64.0 kB [list of files]
armel 1.0.9-3+b1 16.3 kB58.0 kB [list of files]
armhf 1.0.9-3+b1 16.3 kB54.0 kB [list of files]
i386 1.0.9-3+b1 18.2 kB66.0 kB [list of files]
mips64el 1.0.9-3+b1 17.6 kB70.0 kB [list of files]
mipsel 1.0.9-3+b1 17.3 kB60.0 kB [list of files]
ppc64el 1.0.9-3+b1 18.1 kB156.0 kB [list of files]
s390x 1.0.9-3+b1 16.9 kB64.0 kB [list of files]