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[ Source: spoa  ]

Package: spoa (4.0.7+ds-1 and others)

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SIMD partial order alignment tool

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

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Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 4.0.7+ds-1+b1 37.1 kB79.0 kB [list of files]