Package: scoary (1.6.16-5)

[ Source: scoary  ]

pangenome-wide association studies

Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the associations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.

Other Packages Related to scoary

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.2)

• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-scipy

  scientific tools for Python 3

• sug: roary

  high speed stand alone pan genome pipeline

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Architecture	Package Size	Installed Size	Files
all	229.5 kB	2,686.0 kB	[list of files]