Package: pdb2pqr (3.5.2+dfsg-3)

Links for pdb2pqr

Debian Resources:

Download Source Package pdb2pqr:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Manuel Prinz (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [www.poissonboltzmann.org]

Similar packages:

Preparation of protein structures for electrostatics calculations

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations. It thus provides a platform-independent utility for converting protein files in PDB format to PQR format. These tasks include:

 * Adding a limited number of missing heavy atoms to biomolecular structures
 * Determining side-chain pKas
 * Placing missing hydrogens
 * Optimizing the protein for favorable hydrogen bonding
 * Assigning charge and radius parameters from a variety of force fields

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dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-numpy

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dep: python3-pdb2pqr

Preparation of protein structures for electrostatics calculations

sug: apbs

Adaptive Poisson Boltzmann Solver

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Architecture	Package Size	Installed Size	Files
all	11.4 kB	32.0 kB	[list of files]