Package: vdjtools (1.2.1+git20190311+repack-1) [non-free]

[ Source: vdjtools  ]

framework for post-analysis of B/T cell repertoires

VDJtools is an open-source Java/Groovy-based framework designed to facilitate analysis of immune repertoire sequencing (RepSeq) data. VDJtools computes a wide set of statistics and is able to perform various forms of cross-sample analysis. Both comprehensive tabular output and publication-ready plots are provided.

The main aims of the VDJtools Project are:

 * To ensure consistency between post-analysis methods and results
 * To save the time of bioinformaticians analyzing RepSeq data
 * To create an API framework facilitating development of new RepSeq
   analysis applications
 * To provide a simple enough command line tool so it could be used by
   immunologists and biologists with little computational background

Other Packages Related to vdjtools

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libvdjtools-java

  Java library of vdjtools

• rec: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• rec: r-cran-circlize

  Circular Visualization

• rec: r-cran-ffield

  Force field simulation for a set of points

• rec: r-cran-ggplot2

  implementation of the Grammar of Graphics

• rec: r-cran-gplots

  GNU R package with tools for plotting data by Greg Warnes et al

• rec: r-cran-gridbase

  GNU R Integration of base and grid graphics

• rec: r-cran-gridextra

  GNU R package with extensions for the grid package

• rec: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• rec: r-cran-plotrix

  GNU R package providing various plotting functions

• rec: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• rec: r-cran-reshape

  Flexibly reshape data

• rec: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• rec: r-cran-scales

  Scale functions for visualization

• rec: r-cran-venndiagram

  Generate High-Resolution Venn and Euler Plots

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