Package: bio-tradis (1.4.5+dfsg2-1)

[ Source: bio-tradis  ]

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

Other Packages Related to bio-tradis

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libexception-class-perl

  module that allows you to declare real exception classes in Perl

• dep: libmoose-perl

  modern Perl object system framework

• dep: libtext-csv-perl

  comma-separated values manipulator (using XS or PurePerl)

• dep: libtry-tiny-perl

  module providing minimalistic try/catch

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: smalt

  Sequence Mapping and Alignment Tool

• dep: tabix

  generic indexer for TAB-delimited genome position files

• sug: artemis

  genome browser and annotation tool

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

Download bio-tradis

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	84.8 kB	245.0 kB	[list of files]