Package: tantan (40-1)

[ Source: tantan  ]

low complexity and tandem repeat masker for biosequences

tantan is a tool to mask simple regions (low complexity and short-period tandem repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent false predictions when searching for homologous regions between two sequences. Simple repeats often align strongly to each other, causing false homology predictions.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: scope::utility, works-with::biological-sequence

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• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.0)

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• dep: libstdc++6 (>= 5.2)

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• dep: zlib1g (>= 1:1.1.4)

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Architecture	Package Size	Installed Size	Files
i386	41.9 kB	119.0 kB	[list of files]