Paquet : r-bioc-cummerbund (2.46.0-1)

[ Paquet source : r-bioc-cummerbund  ]

tool for analysis of Cufflinks RNA-Seq output

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Autres paquets associés à r-bioc-cummerbund

• dep: r-api-4.0

  paquet virtuel fourni par r-base-core

• dep: r-api-bioc-3.19

  paquet virtuel fourni par r-bioc-biocgenerics

• dep: r-bioc-biobase

  fonctions de base pour Bioconductor

• dep: r-bioc-biocgenerics (>= 0.3.2)

  generic functions for Bioconductor

• dep: r-bioc-gviz

  Plotting data and annotation information along genomic coordinates

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-fastcluster

  Fast hierarchical clustering routines for GNU R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-cran-cluster

  paquet GNU R pour l'analyse de grappe, écrit par Rousseeuw et al.

• sug: r-cran-rjson

  GNU R package for converting between R and JSON objects

• sug: r-cran-stringr

  Make it easier to work with strings

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	2 452,1 ko	9 094,0 ko	[liste des fichiers]