Paquet : bbmap (39.09+dfsg-1)
Liens pour bbmap
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source bbmap :
Responsables :
- Debian Med Packaging Team (Page QA, Archive du courrier électronique)
- Andreas Tille (Page QA)
- Étienne Mollier (Page QA)
Ressources externes :
- Page d'accueil [sourceforge.net]
Paquets similaires :
BBTools genomic aligner and other tools for short sequences
The BBTools are a collection of small programs to solve recurrent tasks for the creative handling of short biological RNA/DNA sequences. This suite may be best known for its mapper, which is also the name of the project on sourceforge, but several tools have been added over time. All tools are multi-threaded, implemented platform-independently in Java:
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels.
BBNorm: Kmer-based error-correction and normalization tool.
Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity.
Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s.
BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.
Autres paquets associés à bbmap
|
|
|
|
-
- dep: libmpj-java
- Java library for parallel applications for multicore processors and clusters
-
- dep: openjdk-17-jre-headless
- environnement d'exécution Java OpenJDK utilisant Hotspot JIT (sans affichage)
- ou java-runtime-headless
- Paquet indisponible
-
- rec: pigz
- implémentation parallèle de gzip
Télécharger bbmap
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
all | 9 996,2 ko | 10 892,0 ko | [liste des fichiers] |