Paquet : tophat-recondition (1.4-3)

[ Paquet source : tophat-recondition  ]

post-processor for TopHat unmapped reads

tophat-recondition is a post-processor for TopHat unmapped reads (contained in unmapped.bam), making them compatible with downstream tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It also works around bugs in TopHat:

 * the "mate is unmapped" SAM flag is not set on any reads in the
   unmapped.bam file (TopHat issue #3)
 * the mapped mate of an unmapped read can be absent from
   accepted_hits.bam, creating a mismatch between the file and the unmapped
   read's flags (TopHat issue #16)

Autres paquets associés à tophat-recondition

• dep: python3

  langage orienté objet interactif de haut niveau – version par défaut de Python 3

• sug: tophat2

  Paquet indisponible

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	10,9 ko	36,0 ko	[liste des fichiers]