Paquet : tnseq-transit (2.3.2-1) [debports]

[ Paquet source :  ]

statistical calculations of essentiality of genes or genomic regions

This is a software that can be used to analyze Tn-Seq datasets. It includes various statistical calculations of essentiality of genes or genomic regions (including conditional essentiality between 2 conditions). These methods were developed and tested as a collaboration between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)

TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1 or Tn5 datasets.

TRANSIT assumes you have already done pre-processing of raw sequencing files (.fastq) and extracted read counts into a .wig formatted file. The .wig file should contain the counts at all sites where an insertion could take place (including sites with no reads). For Himar1 datasets this is all TA sites in the genome. For Tn5 datasets this would be all nucleotides in the genome.

Autres paquets associés à tnseq-transit

• dep: python

  Paquet indisponible

• dep: python-matplotlib

  Paquet indisponible

• dep: python-numpy

  Paquet indisponible

• dep: python-pillow

  Paquet indisponible

• dep: python-pkg-resources

  Paquet indisponible

• dep: python-scipy

  Paquet indisponible

• dep: python-wxgtk3.0

  Paquet indisponible

Télécharger tnseq-transit

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
sparc64 (portage non officiel)	5 916,9 ko	35 975,0 ko	[liste des fichiers]