Paquet : progressivemauve (1.2.0+4713+dfsg-5 et autres) [debports]

[ Paquet source :  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Autres paquets associés à progressivemauve

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  opérations sur le système de fichiers (chemins portables, itération sur des répertoires,⋅etc.) en C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  bibliothèque Boost.Iostreams

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  bibliothèque d'options de programmes pour C++

• dep: libboost-system1.83.0 (>= 1.83.0)

  bibliothèque de système d'exploitation (par ex. gestion des diagnostics)

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  bibliothèque de prise en charge de GCC

• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

  toolkit for developing bioinformatic related software

• dep: libmems1 (>= 1.6.0+4725)

  library to support DNA string matching and comparative genomics

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 13.1)

  bibliothèque standard C++ de GNU v3

• enh: mauve-aligner

  multiple genome alignment

Télécharger progressivemauve

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
sparc64 (portage non officiel)	1.2.0+4713+dfsg-5+b2	813,5 ko	27 865,0 ko	[liste des fichiers]