Paquet : rdp-classifier (2.10.2-7)

[ Paquet source : rdp-classifier  ]

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial and archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies.

Autres paquets associés à rdp-classifier

• dep: default-jre

  environnement d'exécution Java standard ou compatible

• dep: libcommons-cli-java

  Command line arguments and options parsing library

• dep: librdp-taxonomy-tree-java

  taxonomy tree library from Ribosomal Database Project (RDP)

• dep: rdp-readseq

  Ribosomal Database Project (RDP) sequence reading and writing

• rec: rdp-classifier-doc

  documentation and examples for rdp-classifier

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