Paquet : jellyfish (2.3.1-4)

[ Paquet source : jellyfish  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Autres paquets associés à jellyfish

• dep: libc6 (>= 2.38)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  bibliothèque de prise en charge de GCC

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (= 2.3.1-4)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 14)

  bibliothèque standard C++ de GNU v3

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
ppc64el	744,5 ko	2 894,0 ko	[liste des fichiers]