Paquet : vcfanno (0.3.5+ds-2) [debports]

[ Paquet source :  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Autres paquets associés à vcfanno

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  bibliothèque de prise en charge de GCC

• dep: libgo22

  bibliothèque d'exécution pour les applications Go GNU

Télécharger vcfanno

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
ppc64 (portage non officiel)	727,7 ko	4 594,0 ko	[liste des fichiers]