Paquet : vg (1.30.0+ds-1 et autres)

[ Paquet source : vg  ]

tools for working with genome variation graphs

variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
  models and transcripts) as walks through nodes connected by edges

This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.

Autres paquets associés à vg

• dep: libatomic1 (>= 4.8)

  bibliothèque de prise en charge fournissant des fonctions internes __atomic

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  bibliothèque d'options de programmes pour C++

• dep: libc6 (>= 2.33)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  Bibliothèque graphique vectorielle Cairo 2D

• dep: libdivsufsort3 (>= 2.0.1)

  fast suffix array construction

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.4)

  bibliothèque de prise en charge de GCC

• dep: libgomp1 (>= 6)

  bibliothèque GCC pour OpenMP (GOMP)

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjansson4 (>= 2.14)

  bibliothèque⋅C pour encoder, décoder et manipuler des données JSON

• dep: libjemalloc2 (>= 5.0.0)

  general-purpose scalable concurrent malloc(3) implementation

• dep: libraptor2-0 (>= 2.0.14)

  bibliothèque Raptor 2 pour la syntaxe RDF

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 12)

  bibliothèque standard C++ de GNU v3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.3+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: zlib1g (>= 1:1.1.4)

  Bibliothèque de compression - binaires

Télécharger vg

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
mips64el	1.30.0+ds-1+b2	6 335,7 ko	33 273,0 ko	[liste des fichiers]